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Title: US5498538: Totally synthetic affinity reagents
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Country: US United States of America

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98 pages

 
Inventor: Kay, Brian K.; Chapel Hill, NC
Fowlkes, Dana M.; Chapel Hill, NC

Assignee: The University of North Carolina at Chapel Hill, Chapel Hill, NC
other patents from UNIVERSITY OF NORTH CAROLINA (599780) (approx. 336)
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Published / Filed: 1996-03-12 / 1993-12-30

Application Number: US1993000176500

IPC Code: Advanced: C07K 14/47; C07K 16/00; C07K 16/18; C07K 16/30; C07K 16/40; C07K 16/44; C12N 15/10; C12N 15/62; C12N 15/70; C40B 40/02;
Core: C07K 14/435; more...
IPC-7: C12N 15/09; C12N 15/62;

ECLA Code: C40B40/02; C07K14/47; C07K16/00; C07K16/18; C07K16/30A; C07K16/30P; C07K16/40; C07K16/44; C12N15/10C1; C12N15/10C12; C12N15/62; C12N15/70;

U.S. Class: Current: 506/002; 435/006; 435/069.1; 435/069.7; 506/009; 506/014; 536/023.4;
Original: 435/069.1; 435/069.7; 435/172.3; 536/023.4;

Field of Search: 435/172.3,69.1,69.7 536/23.4

Priority Number:
1993-12-30  US1993000176500

Abstract:     A novel method for producing novel and/or improved heterofunctional binding fusion proteins termed Totally Synthetic Affinity Reagents (TSARs) is disclosed. TSARs are concatenated heterofunctional proteins, polypeptides or peptides comprising at least two functional regions: a binding domain with affinity for a ligand and a second effector peptide portion that is chemically or biologically active. In one embodiment, the heterofunctional proteins, polypeptides or peptides further comprise a linker peptide portion between the binding domain and the second active peptide portion. The linker peptide can be either susceptible or not susceptible to cleavage by enzymatic or chemical means. Novel and/or improved heterofunctional binding reagents as well as methods for using the reagents for a variety of in vitro and in vivo applications are also disclosed.

Attorney, Agent or Firm: Pennie & Edmonds ;

Primary / Asst. Examiners: Walsh, Stephen G.; Ulm, John D.

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Related Applications: Go to Result Set: 5 patent(s) that list this one as related
Application Number Filed Patent Pub. Date  Title
US1993000013416 1993-02-01       
US1992000854133 1992-03-19       
US1990000480420 1990-02-15       


       
Parent Case:     This application is a continuation of application Ser. No. 08/013,416 filed Feb. 1, 1993, now abandoned, which in turn is a continuation-in-part of application Ser. No. 07/854,133 filed Mar. 19, 1992, now abandoned, which in turn is a continuation of application Ser. No. 07/480,420 filed Feb. 15, 1990, now abandoned, the entire disclosures of which are incorporated herein by reference.

Designated Country: BE CH DK ES FR GB GR IT LI LU NL SE  IE MC PT  KR 

Family: Show 31 known family members

First Claim:
Show all 26 claims
What is claimed is:     1. A method for identifying a protein, polypeptide and/or peptide which binds to a ligand of choice, comprising: screening a library of recombinant vectors in which each vector encodes one of a plurality of heterofunctional fusion proteins containing
  • (a) a binding domain encoded by a double stranded oligonucleotide assembled by annealing a first nucleotide sequence of the formula 5' X (NNB)n J Z 3' with a second nucleotide sequence of the formula

  •     3.Z'O U (NNV)m Y5'
where
  • X and Y are restriction enzyme recognition sites, such that X.noteq.Y;
  • N is A, C, G or T;
  • B is G, T or C;
  • V is G, A or C;
  • n is an integer, such that 10<=n<=100;
  • m is an integer, such that 10<=m<=100;
  • Z and Z' are each a sequence of 6, 9 or 12 nucleotides, such that
  • Z and Z' are complementary to each other; and
  • J is A, C, G, T or nothing;
  • O is A, C, G, T or nothing; and
  • U is G, A, C or nothing; provided, however, if any one of J, O or U is nothing then J, O and U are all nothing, and converting the annealed oligonucleotides to a double stranded oligonucleotide, and
  • (b) an effector domain encoded by an oligonucleotide sequence encoding a protein or peptide that enhances expression or detection of the binding domain, by contacting the plurality of heterofunctional fusion proteins with said ligand of choice under conditions conducive to ligand binding and isolating any fusion prosthesis which bind said ligand.


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Forward References: Show 37 U.S. patent(s) that reference this one

       
U.S. References: Go to Result Set: All U.S. references   |  Forward references (37)   |   Backward references (8)   |   Citation Link

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Patent  Pub.Date  Inventor Assignee   Title
Buy PDF- 9pp US4522918  1985-06 Schlom et al.   Process for producing monoclonal antibodies reactive with human breast cancer
Buy PDF- 10pp US4612282  1986-09 Schlom et al.  The United States of America as represented by the Secretary of the Department of Health and Human Services Monoclonal antibodies reactive with human breast cancer
Buy PDF- 11pp US4732864  1988-03 Tolman  E. I. Du Pont de Nemours and Company Trace-labeled conjugates of metallothionein and target-seeking biologically active molecules
Buy PDF- 13pp US4769326  1988-09 Rutter  The Regents of the University of California Expression linkers
Buy PDF- 112pp US5096815  1992-03 Ladner et al.  Protein Engineering Corporation Generation and selection of novel DNA-binding proteins and polypeptides
Buy PDF- 17pp US5162504  1992-11 Horoszewicz  Cytogen Corporation Monoclonal antibodies to a new antigenic marker in epithelial prostatic cells and serum of prostatic cancer patients
Buy PDF- 145pp US5198346  1993-03 Ladner et al.  Protein Engineering Corp. Generation and selection of novel DNA-binding proteins and polypeptides
Buy PDF- 217pp US5223409  1993-06 Ladner et al.  Protein Engineering Corp. Directed evolution of novel binding proteins
       
Foreign References:
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PDF
Publication Date IPC Code Assignee   Title
Get PDF - 41pp EP0035384 1981-09  C12N 15/00 THE REGENTS OF THE UNIVERSITY OF CALIFORNIA Deoxynucleotide linkers to be attached to a cloned DNA coding sequence 
Buy PDF- 51pp EP0244221 1987-11  C07K 14/37 GENENTECH INC Hybrid receptors, nucleic acid encoding them, their preparation, and their use in determination of ligands and their antagonists and agonists. 
Buy PDF- 19pp EP0371820 1990-06  C12N 15/09 SALK INST FOR BIOLOGICAL STUDI Novel receptors: their identification, characterization, preparation and use 
Buy PDF- 25pp EP0383620A2 1990-08  A61K 38/00 REPLIGEN CORPORATION Process for making genes encoding random polymers of amino acids 
  FR0590689A2 1994-04       
Buy PDF- 1pp GB2183661 1982-06  G01N 33/50 BALLIVET MARC METHOD FOR OBTAINING DNA, RNA, PEPTIDES, POLYPEPTIDES OR PROTEINS BY MEANS OF A DNA RECOMBINANT TECHNIQUE 
Buy PDF- 87pp WO8502909 1985-07  G01N 33/531 SCRIPPS CLINIC AND RESEARCH FOUNDATION ANTI-IDIOTYPE ANTIBODIES INDUCED BY SYNTHETIC POLYPEPTIDES 
Buy PDF- 43pp WO8600991 1986-02  G01N 33/53 COMMONWEALTH SERUM LABORATORIES COMMISSION METHOD FOR DETERMINING MIMOTOPES 
Buy PDF- 52pp WO8605803 1986-10  C12N 15/00 BALLIVET MARC METHOD FOR OBTAINING DNA, RNA, PEPTIDES, POLYPEPTIDES OR PROTEINS BY MEANS OF A DNA RECOMBINANT TECHNIQUE 
Buy PDF- 32pp WO8606487 1986-11  G01N 33/53 COMMONWEALTH SERUM LABORATORIES COMMISSION METHOD FOR DETERMINING MIMOTOPES 
Buy PDF- 245pp WO8803168 1988-05  C12N 15/00 SALK INST FOR BIOLOGICAL STUDI HORMONE RECEPTOR COMPOSITIONS AND METHODS 
Buy PDF- 20pp WO8806630 1988-09  C07K 16/00 GENEX CORPORATION METHOD FOR THE PREPARATION OF BINDING MOLECULES 
Buy PDF- 78pp WO9001035 1990-02  A61K 38/00 THE UNITED STATES OF AMERICA, represented by THE ... CYTOTOXIC AGENT AGAINST SPECIFIC VIRUS INFECTION 
Buy PDF- 270pp WO9002809 1990-03  C12N 15/00 PROTEIN ENG CORP GENERATION AND SELECTION OF RECOMBINANT VARIED BINDING PROTEINS 
Buy PDF- 304pp WO9007862 1990-07  C12N 15/09 PROTEIN ENGINEERING CORPORATION GENERATION AND SELECTION OF NOVEL DNA-BINDING PROTEINS AND POLYPEPTIDES 
Buy PDF- 159pp WO9014430 1990-11  C12N 15/09 SCRIPPS CLINIC AND RESEARCH FOUNDATION A NEW METHOD FOR TAPPING THE IMMUNOLOGICAL REPERTOIRE 
Buy PDF- 52pp WO9104329 1991-04  C12N 15/09 ABBOTT LAB METHOD OF PRODUCING FUSION PROTEINS 
Buy PDF- 54pp WO9105058 1991-04  C12N 15/09 KAWASAKI GLENN CELL-FREE SYNTHESIS AND ISOLATION OF NOVEL GENES AND POLYPEPTIDES 
Buy PDF- 81pp WO9112328 1991-08  C07K 19/00 FOWLKES, Dana, M. TOTALLY SYNTHETIC AFFINITY REAGENTS 
Buy PDF- 73pp WO9116912 1991-11  A61K 35/14 SCRIPPS CLINIC AND RESEARCH FOUNDATION METAL BINDING PROTEINS 
Buy PDF- 39pp WO9117271 1991-11  C07K 14/00 AFFYMAX TECH NV RECOMBINANT LIBRARY SCREENING METHODS 
Buy PDF- 29pp WO9118980 1991-12  C07K 14/00 CETUS CORP COMPOSITIONS AND METHODS FOR IDENTIFYING BIOLOGICALLY ACTIVE MOLECULES 
Buy PDF- 69pp WO9119818 1991-12  C12N 1/21 AFFYMAX TECH NV PEPTIDE LIBRARY AND SCREENING SYSTEMS 
Buy PDF- 110pp WO9200091 1992-01  A61K 37/02 BIOLIGAND INC RANDOM BIO-OLIGOMER LIBRARY, A METHOD OF SYNTHESIS THEREOF, AND A METHOD OF USE THEREOF 
Buy PDF- 35pp WO9203461 1992-03  C07H 17/00 IXSYS, INC. METHODS OF SYNTHESIZING OLIGONUCLEOTIDES WITH RANDOM CODONS 
Buy PDF- 142pp WO9206176 1992-04  C12N 1/21 IXSYS INC SURFACE EXPRESSION LIBRARIES OF RANDOMIZED PEPTIDES 
Buy PDF- 63pp WO9206191 1992-04  A61K 8/30 GUTERMAN, Sonia, Kosow PROTEINACEOUS ANTI-DENTAL PLAQUE AGENTS 
Buy PDF- 108pp WO9206204 1992-04  C07K 14/00 IXSYS, INC. SURFACE EXPRESSION LIBRARIES OF HETEROMERIC RECEPTORS 
Buy PDF- 38pp WO9211272 1992-07  C07H 15/12 IXSYS, INC. OPTIMIZATION OF BINDING PROTEINS 
Buy PDF- 152pp WO9215677 1992-09  A61K 38/00 PROTEIN ENGINEERING CORPORATION PROCESS FOR THE DEVELOPMENT OF BINDING MINI-PROTEINS 
Buy PDF- 169pp WO9215679 1992-09  A61K 38/00 PROTEIN ENGINEERING CORPORATION IMPROVED EPITODE DISPLAYING PHAGE 
Buy PDF- 51pp WO9215702 1992-09  C07K 16/00 BRADBURY, Andrew, Raymon, Morton THE BIOLOGICAL SELECTION OF USEFUL MOLECULES 


Other Abstract Info: CHEMABS 115(19)200369G CHEMABS 121(23)273845T CHEMABS 129(02)013206D DERABS C1991-267139 DERABS C1994-279739

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